PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000322257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 963aa    MW: 108090 Da    PI: 7.3217
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000322257genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.22.6e-21901952359
                    -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    D y+WrKYGqK++kgs++p     C  +gCp++k+ver+ edp+++++tYeg+H+h+
  MDP0000322257 901 DDYSWRKYGQKPIKGSPYPS----C-VRGCPARKHVERCLEDPNMLVVTYEGNHQHP 952
                    99***************995....4.78****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF059041.6E-19558637IPR008581Protein of unknown function DUF863, plant
PfamPF105339.6E-16855897IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-22886953IPR003657WRKY domain
PROSITE profilePS5081121.769894954IPR003657WRKY domain
SuperFamilySSF1182901.96E-18897953IPR003657WRKY domain
SMARTSM007741.1E-24899953IPR003657WRKY domain
PfamPF031067.4E-17901952IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MLMRGDLDLN SMRAYTXSLD DVVRKTMLSQ EIMFKKQVHE LHHLYRIQKT LMQNLGRMEF  60
GRYNHSIAGA DFNLLPRRNY GRDEHMCGDL VLVFEVRFTQ SIFQDLLERC KGVDDKIQPR  120
NPELKLHTDQ CISYIDPAEL KLSLSIQEDN RKEGGTKRIW FDLETHSCSQ HMIDLEEPIE  180
RTSNEGLEQS PSFSSTAPIT XARGTNNSEV SVLFDPIISS SVKKNIFFHA AXCNPHLDGS  240
EWNPFNQGLE KRSGGIAINN SSTTRQHFGS YETGLLDLNK IQNDDSSCLS NDHTVAHFST  300
ASSSHLRGLV SKVEEGTHCY ETGKKLNNNG SIETLERFQK YNAGNVKVDG SSISGMGNVS  360
LEAAPRSKID LQEAVGFHSN DSSNGNNGFV IKLLNSRSSS CTSARQVNCE NNKVEDPVFS  420
YTDHCRKVDP DGHGNISSAS CKPCCIGEDD SRSVKTMQSE IEYXTSNPFS VDQFSGTHVG  480
SQVSETLMGE QDRRSSDNSE LKHKDLDKGG DSAELNVLIR AAEALVRISL ESSSCCHDCT  540
YEVGGANKME TKGSEQPQCS SDSYELLTLN LIEXTEDDYC VSLKPSEVNY NDSKEFGVKL  600
RRGRRMKDFQ RDILPGLASL SRHEIREDIN IMETVLRSRE YKKLRGKVAD YQSWESGVCL  660
SRNPGMDFTI HEVAQSSLKH AHRLFXCISE KKHKRSAQEV SLXAQDAVNE FRKLLTLLDG  720
SILSNQKRIR RGPLPESHGI NQVELLESHH XCLGFRQLFS NTHQSDHVAA NVIRSNGFSM  780
GRERKPSLAL QQGHCETSVV LPNNLIMGLN QFSQKPSTSL ISMDGSSINT QTWMIHYSSS  840
ELFASRDSDS MFSSKKKCEE ASTRCLASTG GCHCSKRRKL RIKRRIRVPA VSNKLADIPP  900
DDYSWRKYGQ KPIKGSPYPS CVRGCPARKH VERCLEDPNM LVVTYEGNHQ HPRFTFQAPS  960
VAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-14887951271WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1880886RIKRRIR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.75180.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348561.10.0PREDICTED: uncharacterized protein LOC103411705 isoform X1
TrEMBLM5WYS50.0M5WYS5_PRUPE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-39WRKY DNA-binding protein 21